PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G029800.1
Common NameB456_011G029800, LOC105777673
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 245aa    MW: 26643.6 Da    PI: 8.8987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G029800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-202272256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa+++++g+
  Gorai.011G029800.1 22 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRGA 72
                        69*******.**********8...557*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-322279IPR001471AP2/ERF domain
PfamPF008476.1E-142271IPR001471AP2/ERF domain
SMARTSM003802.3E-362285IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-222280IPR016177DNA-binding domain
PROSITE profilePS5103223.672279IPR001471AP2/ERF domain
CDDcd000181.90E-182279No hitNo description
PRINTSPR003678.6E-112334IPR001471AP2/ERF domain
PRINTSPR003678.6E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAPREKTADV KGNGNGCTKE VHFRGVRKRP WGRYAAEIRD PGKKSRVWLG TFDTAEEAAK  60
AYDAAAREFR GAKAKTNFPL PGEILNNGSN CNNNGDTNCS NNNNNHSPSR SSTVESSSHE  120
PPTVVKCSPL DLNLGHGAVI GYGSPAVRLP FPQISSVTGF FANGVPAVAA PQVFYFDALV  180
RPGVMKGQQY QQRLRFDHRD YHETFNAGVQ SDSDSSSVVD LNHHEIKRRP LLNIDLNQPA  240
PEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-211880164ATERF1
2gcc_A1e-211880164ATERF1
1gcc_A1e-212280261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.14950.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0038060.0JN003806.1 Gossypium barbadense ethylene-responsive element-binding protein 3 (EREB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456491.10.0PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A067XGU20.0A0A067XGU2_G
TrEMBLA0A0D2VHI00.0A0A0D2VHI0_G
STRINGVIT_10s0003g00140.t012e-63(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2436034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-30erf domain protein 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]